GPUGRID
http://www.gpugrid.net/
Volunteer computing for biomedicine
GPUGRID.net is a distributed computing infrastructure devoted to biomedical research. Thanks to the contribution of volunteers, GPUGRID scientists can perform molecular simulations to understand the function of proteins in health and disease.
Research technique
Molecular Dynamics Simulations
Molecular dynamics (MD) is a form of computer simulation in which atoms and molecules are allowed to interact for a period of time by approximations of known physics, giving a view of the motion of the atoms. Because molecular systems generally consist of a vast number of particles, it is impossible to find the properties of such complex systems analytically; MD simulation circumvents this problem by using numerical methods. It represents an interface between laboratory experiments and theory, and can be understood as a "virtual experiment". MD probes the relationship between molecular structure, movement and function. Molecular dynamics is a multidisciplinary method. Its laws and theories stem from mathematics, physics, and chemistry, and it employs algorithms from computer science and information theory. It was originally conceived within theoretical physics in the late 1950s, but is applied today mostly in materials science and biomolecules. Read more
GPUGRID project details
Forum rules
#1 GPUGRID project details
The best form of help from above is a sniper on the rooftop....
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#2 Re: GPUGRID project details
I think this is fool-proof but could you just try it for me please? • There are 10 types of people in the world; those who understand binary, and those who don’t
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#3 Re: GPUGRID project details
thank You ... sincerely, Gregg Roman Granowski
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- San Dan
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#4 Re: GPUGRID project details
Gpugrid's new gpu wu's need libboost-filesystem1.74.0 which is on Ubuntu 21.04 (Hirsute Hippo) not sure if it's on any other Linux OS but this seems to be the key to running the new AceMD wu's.
After upgrading all three systems they are crunching the wu's as apposed to failing after 3 secs.
After upgrading all three systems they are crunching the wu's as apposed to failing after 3 secs.
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#5 Re: GPUGRID project details
Yup - I can confirm that the problem occurs on 2070 Super on Ubuntu 20.04 so not just limited to 30 Series.
Bugger, I was planning to stay with LTS releases but I guess needs must
Bugger, I was planning to stay with LTS releases but I guess needs must
I think this is fool-proof but could you just try it for me please? • There are 10 types of people in the world; those who understand binary, and those who don’t
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- San Dan
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#6 Re: GPUGRID project details
Average of about 6300 secs scores 107,680 points on my 3080ti's only getting one or two wu's a day on each of the machines.